Search Genotype Calls
Arguments
- con
A
brapi_connection()object.- variantSetDbIds
Character vector. Filter by variant set IDs.
- callSetDbIds
Character vector. Filter by call set IDs.
- ...
Additional search body parameters.
Examples
# \donttest{
con <- brapi_connection("https://test-server.brapi.org")
brapi_search_calls(con, variantSetDbIds = "variantset1")
#> ℹ Async search started (ID: 4d9d23a7-56b6-4ffa-8499-8de30a43bb5c). Polling...
#> # A tibble: 260 × 12
#> additionalInfo callSetDbId callSetName genotype genotypeValue
#> <lgl> <chr> <chr> <list> <chr>
#> 1 NA callset01 P2 <named list [1]> 0/0
#> 2 NA callset01 P2 <named list [1]> 0/0
#> 3 NA callset01 P2 <named list [1]> 0/0
#> 4 NA callset01 P2 <named list [1]> 0/0
#> 5 NA callset01 P2 <named list [1]> 0/0
#> 6 NA callset01 P2 <named list [1]> 0/1
#> 7 NA callset01 P2 <named list [1]> 0/1
#> 8 NA callset01 P2 <named list [1]> 1/0
#> 9 NA callset01 P2 <named list [1]> 1/0
#> 10 NA callset01 P2 <named list [1]> 0/0
#> # ℹ 250 more rows
#> # ℹ 7 more variables: genotypeMetadata <list>, genotype_likelihood <list>,
#> # phaseSet <chr>, variantDbId <chr>, variantName <chr>, variantSetDbId <chr>,
#> # variantSetName <chr>
# }