Convenience function that retrieves variant positions as a tidy tibble with columns for marker name, chromosome, and position.
Arguments
- con
A
brapi_connection()object.- variantSetDbId
Character. The variant set to retrieve markers from.
Value
A tibble with columns: variantDbId, variantName,
referenceName (chromosome), start (position in bp).
Examples
# \donttest{
con <- brapi_connection("https://test-server.brapi.org")
markers <- brapi_get_marker_map(con, "variantset1")
head(markers)
#> # A tibble: 6 × 4
#> variantDbId variantName referenceName start
#> <chr> <chr> <lgl> <lgl>
#> 1 variant01 M1 NA NA
#> 2 variant02 M2 NA NA
#> 3 variant03 M3 NA NA
#> 4 variant04 M4 NA NA
#> 5 variant05 M5 NA NA
#> 6 variant06 M6 NA NA
# }